노벨스타이츠구조생물연구센터

                 
 
 
   Journal
  Acta Crystallographica Section D     Journal of Molecular Biology
  Achives of Biochemistry and Biophysics     Journal of Neuroscience
  ASBMB online journals (JBC, TiBS)     Journal of Structural Biology
  ASM online journals (J. Bact., etc.)     Molecular & Cellular Biology
  BBA-Protein structure & Molecular enzymology     Molecular Biology of the Cell
  Biochemical and Biophysical Research Comm     Molecular Cell
  Biochemical Journal     Nature
  Biochemistry     Nature Biotechnology
  Biolphysical Journal     Nature Genetics
  Biotechnology & Bioengineering     Nature Structural & Molecular Biology
  Cell     Neuron
  Current Opinion     Neuroscience
  Current Biology     Nucleic Acid Research
  EMBO Journal     PNAS
  European Journal of Biochemistry     Protein Engineering Design and Selection
  FASEB Journal     Protein Expression and Purification
  FEBS LETTERS     Protein Science
  Journal of Cell Biology     Proteins: Structure, Function, and Genetics
  Journal of Bacteriology     Science
  Journal of Biochemistry
    Structure
  Journal of Biological Chemistry     Trends
     
   Databases
  BMCD     NCBI GenBank
  EcoCyc (E. coli database)     PredictProtein Server (Input_ID)
  EXPASY     Protein Data Bank
  HIC-UP     TIGR
  NCBI - Blast    
     
   Structure Information & Analysis Servers
  CATH
  (Hierarchical Classification of Protein Domail Structures)

    PROCAT (DB of 3D Enzyme Active Sites)
  CCA+ (CD spectrum analyser program)     Protein Model Assessment Server (Molprobity)
  CD pro (CD spectrum analyser program)     Protein-Protein Interaction Server
  CE (Combinational Extension)
    Protein Secondary Structure
  Crystal twinning server
    REFOLD (Refolding protocol)
  DALI     Restriction Enzyme Site Analysis
  Dichroweb (CD spectrum analyser program)     RHYTHM (Prediction of Helix-Helix contacts)
  DrawCoil 1.0 (helical wheel diagram)     SCOP (Structural Classification of Proteins)
  ERRAT     Secondary Structure Superposition
  HIT (Helix Interaction Tool)     SER (surface enthropy reduction)
  K2D (CD spectrum analyser program)     Similar 3D structures
  LZ prediction site (Leucine Zipper prediction server)     Structure Based Sequence Alignment
  PDBsum (Protein Secondary Topology Diagram)     The Institute of Enzymolgy
  Phyre (Protein analysis program)     TOPDOM
  PQS (Protein Quaternary Structure) Query Server
    Verify3D (3D-1D plot)
  PredictProtein (Protein analysis program_Input_ID)    
 
   Crystallography Softwares
  ARP and wARP    Periodic Tables (scattering factor) 
  AutoDock     Phaser
  Automated structure solution (for MIR and MAD)     PREPI v0.9 (alpha release)
  BOBSCRIPT manual     PROCHECK
  CCP4 Suite     PyMOL
  CNS     RasMol
  DINO : Visualizing Structural Biology     Raster 3D
  DOCK     RIBBONS
  GRASP     Scripps Xtal View
  HKL package     SHARP/autoSHARP
  MAID (ed fitting)     SHELX
  MODELLER     SINCRIS (Software database for crystallography)
  Molray     SOLVE/RESOLVE
  MOLMOL    Twinning Detection  
  MOLSCRIPT v2.0     Uppsala Software Factory (USF)
  O (Alwyn Jones homepage)     X-PLOR
  O (Morten Kjeldgaard)    

 

   Synchrotron Facilities
  Advanced Light Source (ALS)     PF (Protein Crystallography)
  Advanced Photon Source (APS)     Photon Factory (PF)
  Australian Synchrotron     Pohang Accelerator Laboratory (PAL)
  Beijing Synchrotron Radiation Facility (BSRF)     Shanghai Synchrotron Radiation Facility (SSRF)
  Deutsches Elektronen-Synchrotron (DESY)     Spring-8
  European Synchrotron Radiation Facility (ESRF)     Stanford Synchrotron Radiation Lighsource (SSRL)
  National Synchrotron Light Source (NSLS)
    Taiwan Photon Source (TPS)
     
   Crystallography related Companies
  Area Detector Systems Corporation (ADSC)     Oxford Cryosystems
  Hampton Research     Rigaku & Emerald Bio
  Molecular Structure Corporation    
     
   Molecular Biology related Companies    
  Agilent Technologies     Novagen / pET System Manual
  Amersham-Pharmacia Biotech     Promega
  Amersham-Pharmacia Biotech (Korea)     Qiagen
  ATCC     RND
  ChemNavigator (>2,000,000 compounds)     Roche
  Life Technologies     Sigma-Aldrich and Fluka
  Merck     Sigma-Aldrich Korea
  Millipore     Takara Korea
  New England Biolab    
     
   Bioinformatics for Structural Biology
  Coils (Coiled-coil prediction)     PredictProtein (Secondary structure prediction_Input_ID)
  ExPASy tools     ProtParam (Physico-chemical parameters of a protein sequence)
  GlobPlot     Protein multiple sequence alignment (Identity & homology check)
  NCBI-Conserved Domain     ProtScale (Hydrophobicity)
  NCBI GenBank (DNA sequence information)     SignalP (signal peptide prediction)
  NCBI-PDB blast     TMpred (Prediction of transmembrane regions)
  NPSA (consensus secondary structure prediction)     UniprotKB : Protein information search
  PeptideCutter (Protease site prediction)     Webcutter (DNA restrictive enzyme site)
  PPCpred (Protein construct design)    
 
   ETC.
  BRIC
    Pubmed
  KOSEN21